| Gene Model: Mc1r |
| Sequence of Experimental Sample |
| Nomenclature | Genomic Location |
| Symbol | Mc1r | Chromosome | 2 |
| Name | Melanocyte-stimulating hormone receptor | Linkage map | unknown |
| Species | Dracomimus familiaris | Genome Coordinates | 2: 30 Mbp |
1 AGGCTACGTGGTGGAGCTATGAACCGATCCCTGGGGAAGAGTTACACTTCAGAAGGATGC
61 TACGAGCAACTTTTTGTCTCGCCGGAAGTCTTTGTTACTCTTGGCTTTGTCAGCTTGCTA
121 GAGAATGTCCTGGTGATCGTGGCTATAGCCAAGAACAAGAATTTGCATTCCCCAATGTAT
181 TTTTTCATTTGCAGCTTAGCTGTGGCAGACTTGCTTGTGAGTGTCTCCAATGGGTCGGAA
241 ACTATCGTCATCACCCTCTTGAACAACACAGACGTGGGCGGCCACAGTTTCACGGTCAGC
301 ATTGACAATATAATTGACTCGGTGATCTGCAGCTCCTTGCTCGCCTCTATTTGTAGTCTG
361 CTCTCCATAGCTGTGGACAGGTACTTTACCATCTTCTATGCTCTCCAGTACCATAACATC
421 ATGACGGTCCGGCGCGTAGGTATCATTATCACCTGCATCTGGGCTGCTTGCACTGTTTCA
481 GGCATCCTGTTCATCATATATTCCGACAGCAGCGTGGTCATCATTTGTCTCATCAGCATG
541 TTCTTTACCATGCTAGTCCTCATGGCATCTCTCTATGTCCACATGTTCCTCCTGGCCCGG
601 CTGCATATTAAAAAGATTGCCATTCTTCCAGGCACGGGACCCATCTGTCAACGGGCCAAC
661 ATGAAGGGGGCAATCACTTTGACCATTTTGATTGGGGTTTTTGTGGTGTGCTGGGCCCCA
721 CTCTTCTTCCATTTGCTTTTCTACATCTCCTGCCCCCACAATCCGTACTGCATTTGCTTC
781 ATGTCACATTTTCACCTCTACCTCATCCTTATCATGTGCAATTCCATTATTGATCCACTT
841 ATTTATGCATTCCGGAGTCAAGAGCTGAGGAAAACCTTCAAAGAGATTATGTGCTGTTAC
901 AGCCTGCGAGAGCTGTGTGATTTCTCCAGCAAATAC
| Predicted Transcript Alignment |
Query is the experimental sequence.
Subject is the genomic sequence and gene model from the whole genome sequence assembly of Nightwing.
Query: 1 AGGCTACGTGGTGGAGCTATGAACCGATCCCTGGGGAAGAGTTACACTTCAGAAGGATGC
AGGCTACGTGGTGGAGCTATGAACCGATCCCTGGGGAAGAGTTACACTTCAGAAGGATGC
Subject: 1 AGGCTACGTGGTGGAGCTATGAACCGATCCCTGGGGAAGAGTTACACTTCAGAAGGATGC
Query: 61 TACGAGCAACTTTTTGTCTCGCCGGAAGTCTTTGTTACTCTTGGCTTTGTCAGCTTGCTA
TACGAGCAACTTTTTGTCTCGCCGGAAGTCTTTGTTACTCTTGGCTTTGTCAGCTTGCTA
Subject: 61 TACGAGCAACTTTTTGTCTCGCCGGAAGTCTTTGTTACTCTTGGCTTTGTCAGCTTGCTA
Query: 121 GAGAATGTCCTGGTGATCGTGGCTATAGCCAAGAACAAGAATTTGCATTCCCCAATGTAT
GAGAATGTCCTGGTGATCGTGGCTATAGCCAAGAACAAGAATTTGCATTCCCCAATGTAT
Subject: 121 GAGAATGTCCTGGTGATCGTGGCTATAGCCAAGAACAAGAATTTGCATTCCCCAATGTAT
Query: 181 TTTTTCATTTGCAGCTTAGCTGTGGCAGACTTGCTTGTGAGTGTCTCCAATGGGTCGGAA
TTTTTCATTTGCAGCTTAGCTGTGGCAGACTTGCTTGTGAGTGTCTCCAATGGGTCGGAA
Subject: 181 TTTTTCATTTGCAGCTTAGCTGTGGCAGACTTGCTTGTGAGTGTCTCCAATGGGTCGGAA
Query: 241 ACTATCGTCATCACCCTCTTGAACAACACAGACGTGGGCGGCCACAGTTTCACGGTCAGC
ACTATCGTCATCACCCTCTTGAACAACACAGACGTGGGCGGCCACAGTTTCACGGTCAGC
Subject: 241 ACTATCGTCATCACCCTCTTGAACAACACAGACGTGGGCGGCCACAGTTTCACGGTCAGC
Query: 301 ATTGACAATATAATTGACTCGGTGATCTGCAGCTCCTTGCTCGCCTCTATTTGTAGTCTG
ATTGACAATATAATTGACTCGGTGATCTGCAGCTCCTTGCTCGCCTCTATTTGTAGTCTG
Subject: 301 ATTGACAATATAATTGACTCGGTGATCTGCAGCTCCTTGCTCGCCTCTATTTGTAGTCTG
Query: 361 CTCTCCATAGCTGTGGACAGGTACTTTACCATCTTCTATGCTCTCCAGTACCATAACATC
CTCTCCATAGCTGTGGACAGGTACTTTACCATCTTCTATGCTCTCCAGTACCATAACATC
Subject: 361 CTCTCCATAGCTGTGGACAGGTACTTTACCATCTTCTATGCTCTCCAGTACCATAACATC
Query: 421 ATGACGGTCCGGCGCGTAGGTATCATTATCACCTGCATCTGGGCTGCTTGCACTGTTTCA
ATGACGGTCCGGCGCGTAGGTATCATTATCACCTGCATCTGGGCTGCTTGCACTGTTTCA
Subject: 421 ATGACGGTCCGGCGCGTAGGTATCATTATCACCTGCATCTGGGCTGCTTGCACTGTTTCA
Query: 481 GGCATCCTGTTCATCATATATTCCGACAGCAGCGTGGTCATCATTTGTCTCATCAGCATG
GGCATCCTGTTCATCATATATTCCGACAGCAGCGTGGTCATCATTTGTCTCATCAGCATG
Subject: 481 GGCATCCTGTTCATCATATATTCCGACAGCAGCGTGGTCATCATTTGTCTCATCAGCATG
Query: 541 TTCTTTACCATGCTAGTCCTCATGGCATCTCTCTATGTCCACATGTTCCTCCTGGCCCGG
TTCTTTACCATGCTAGTCCTCATGGCATCTCTCTATGTCCACATGTTCCTCCTGGCCCGG
Subject: 541 TTCTTTACCATGCTAGTCCTCATGGCATCTCTCTATGTCCACATGTTCCTCCTGGCCCGG
Query: 601 CTGCATATTAAAAAGATTGCCATTCTTCCAGGCACGGGACCCATCTGTCAACGGGCCAAC
CTGCATATTAAAAAGATTGCCATTCTTCCAGGCACGGGACCCATCTGTCAACGGGCCAAC
Subject: 601 CTGCATATTAAAAAGATTGCCATTCTTCCAGGCACGGGACCCATCTGTCAACGGGCCAAC
Query: 661 ATGAAGGGGGCAATCACTTTGACCATTTTGATTGGGGTTTTTGTGGTGTGCTGGGCCCCA
ATGAAGGGGGCAATCACTTTGACCATTTTGATTGGGGTTTTTGTGGTGTGCTGGGCCCCA
Subject: 661 ATGAAGGGGGCAATCACTTTGACCATTTTGATTGGGGTTTTTGTGGTGTGCTGGGCCCCA
Query: 721 CTCTTCTTCCATTTGCTTTTCTACATCTCCTGCCCCCACAATCCGTACTGCATTTGCTTC
CTCTTCTTCCATTTGCTTTTCTACATCTCCTGCCCCCACAATCCGTACTGCATTTGCTTC
Subject: 721 CTCTTCTTCCATTTGCTTTTCTACATCTCCTGCCCCCACAATCCGTACTGCATTTGCTTC
Query: 781 ATGTCACATTTTCACCTCTACCTCATCCTTATCATGTGCAATTCCATTATTGATCCACTT
ATGTCACATTTTCACCTCTACCTCATCCTTATCATGTGCAATTCCATTATTGATCCACTT
Subject: 781 ATGTCACATTTTCACCTCTACCTCATCCTTATCATGTGCAATTCCATTATTGATCCACTT
Query: 841 ATTTATGCATTCCGGAGTCAAGAGCTGAGGAAAACCTTCAAAGAGATTATGTGCTGTTAC
ATTTATGCATTCCGGAGTCAAGAGCTGAGGAAAACCTTCAAAGAGATTATGTGCTGTTAC
Subject: 841 ATTTATGCATTCCGGAGTCAAGAGCTGAGGAAAACCTTCAAAGAGATTATGTGCTGTTAC
Query: 901 AGCCTGCGAGAGCTGTGTGATTTCTCCAGCAAATAC
AGCCTGCGAGAGCTGTGTGATTTCTCCAGCAAATAC
Subject: 901 AGCCTGCGAGAGCTGTGTGATTTCTCCAGCAAATAC
| Predicted Protein Alignment |
Query is the experimental sequence.
Subject is the genomic sequence and gene model from the whole genome sequence assembly of Nightwing.
Query: 1 RLRGGAMNRSLGKSYTSEGCYEQLFVSPEVFVTLGFVSLLENVLVIVAIAKNKNLHSPMY
RLRGGAMNRSLGKSYTSEGCYEQLFVSPEVFVTLGFVSLLENVLVIVAIAKNKNLHSPMY
Subject: 1 RLRGGAMNRSLGKSYTSEGCYEQLFVSPEVFVTLGFVSLLENVLVIVAIAKNKNLHSPMY
Query: 61 TACGAGCAACTTTTTGTCTCGCCGGAAGTCTTTGTTACTCTTGGCTTTGTCAGCTTGCTA
TACGAGCAACTTTTTGTCTCGCCGGAAGTCTTTGTTACTCTTGGCTTTGTCAGCTTGCTA
Subject: 61 TACGAGCAACTTTTTGTCTCGCCGGAAGTCTTTGTTACTCTTGGCTTTGTCAGCTTGCTA
Query: 121 GAGAATGTCCTGGTGATCGTGGCTATAGCCAAGAACAAGAATTTGCATTCCCCAATGTAT
GAGAATGTCCTGGTGATCGTGGCTATAGCCAAGAACAAGAATTTGCATTCCCCAATGTAT
Subject: 121 GAGAATGTCCTGGTGATCGTGGCTATAGCCAAGAACAAGAATTTGCATTCCCCAATGTAT
Query: 181 TTTTTCATTTGCAGCTTAGCTGTGGCAGACTTGCTTGTGAGTGTCTCCAATGGGTCGGAA
TTTTTCATTTGCAGCTTAGCTGTGGCAGACTTGCTTGTGAGTGTCTCCAATGGGTCGGAA
Subject: 181 TTTTTCATTTGCAGCTTAGCTGTGGCAGACTTGCTTGTGAGTGTCTCCAATGGGTCGGAA
Query: 241 ACTATCGTCATCACCCTCTTGAACAACACAGACGTGGGCGGCCACAGTTTCACGGTCAGC
ACTATCGTCATCACCCTCTTGAACAACACAGACGTGGGCGGCCACAGTTTCACGGTCAGC
Subject: 241 ACTATCGTCATCACCCTCTTGAACAACACAGACGTGGGCGGCCACAGTTTCACGGTCAGC
Query: 301 ATTGACAATATAATTGACTCGGTGATCTGCAGCTCCTTGCTCGCCTCTATTTGTAGTCTG
ATTGACAATATAATTGACTCGGTGATCTGCAGCTCCTTGCTCGCCTCTATTTGTAGTCTG
Subject: 301 ATTGACAATATAATTGACTCGGTGATCTGCAGCTCCTTGCTCGCCTCTATTTGTAGTCTG
Query: 361 CTCTCCATAGCTGTGGACAGGTACTTTACCATCTTCTATGCTCTCCAGTACCATAACATC
CTCTCCATAGCTGTGGACAGGTACTTTACCATCTTCTATGCTCTCCAGTACCATAACATC
Subject: 361 CTCTCCATAGCTGTGGACAGGTACTTTACCATCTTCTATGCTCTCCAGTACCATAACATC
Query: 421 ATGACGGTCCGGCGCGTAGGTATCATTATCACCTGCATCTGGGCTGCTTGCACTGTTTCA
ATGACGGTCCGGCGCGTAGGTATCATTATCACCTGCATCTGGGCTGCTTGCACTGTTTCA
Subject: 421 ATGACGGTCCGGCGCGTAGGTATCATTATCACCTGCATCTGGGCTGCTTGCACTGTTTCA
Query: 481 GGCATCCTGTTCATCATATATTCCGACAGCAGCGTGGTCATCATTTGTCTCATCAGCATG
GGCATCCTGTTCATCATATATTCCGACAGCAGCGTGGTCATCATTTGTCTCATCAGCATG
Subject: 481 GGCATCCTGTTCATCATATATTCCGACAGCAGCGTGGTCATCATTTGTCTCATCAGCATG
Query: 541 TTCTTTACCATGCTAGTCCTCATGGCATCTCTCTATGTCCACATGTTCCTCCTGGCCCGG
TTCTTTACCATGCTAGTCCTCATGGCATCTCTCTATGTCCACATGTTCCTCCTGGCCCGG
Subject: 541 TTCTTTACCATGCTAGTCCTCATGGCATCTCTCTATGTCCACATGTTCCTCCTGGCCCGG
Query: 601 CTGCATATTAAAAAGATTGCCATTCTTCCAGGCACGGGACCCATCTGTCAACGGGCCAAC
CTGCATATTAAAAAGATTGCCATTCTTCCAGGCACGGGACCCATCTGTCAACGGGCCAAC
Subject: 601 CTGCATATTAAAAAGATTGCCATTCTTCCAGGCACGGGACCCATCTGTCAACGGGCCAAC
Query: 661 ATGAAGGGGGCAATCACTTTGACCATTTTGATTGGGGTTTTTGTGGTGTGCTGGGCCCCA
ATGAAGGGGGCAATCACTTTGACCATTTTGATTGGGGTTTTTGTGGTGTGCTGGGCCCCA
Subject: 661 ATGAAGGGGGCAATCACTTTGACCATTTTGATTGGGGTTTTTGTGGTGTGCTGGGCCCCA
Query: 721 CTCTTCTTCCATTTGCTTTTCTACATCTCCTGCCCCCACAATCCGTACTGCATTTGCTTC
CTCTTCTTCCATTTGCTTTTCTACATCTCCTGCCCCCACAATCCGTACTGCATTTGCTTC
Subject: 721 CTCTTCTTCCATTTGCTTTTCTACATCTCCTGCCCCCACAATCCGTACTGCATTTGCTTC
Query: 781 ATGTCACATTTTCACCTCTACCTCATCCTTATCATGTGCAATTCCATTATTGATCCACTT
ATGTCACATTTTCACCTCTACCTCATCCTTATCATGTGCAATTCCATTATTGATCCACTT
Subject: 781 ATGTCACATTTTCACCTCTACCTCATCCTTATCATGTGCAATTCCATTATTGATCCACTT
Query: 841 ATTTATGCATTCCGGAGTCAAGAGCTGAGGAAAACCTTCAAAGAGATTATGTGCTGTTAC
ATTTATGCATTCCGGAGTCAAGAGCTGAGGAAAACCTTCAAAGAGATTATGTGCTGTTAC
Subject: 841 ATTTATGCATTCCGGAGTCAAGAGCTGAGGAAAACCTTCAAAGAGATTATGTGCTGTTAC
Query: 901 AGCCTGCGAGAGCTGTGTGATTTCTCCAGCAAATAC
AGCCTGCGAGAGCTGTGTGATTTCTCCAGCAAATAC
Subject: 901 AGCCTGCGAGAGCTGTGTGATTTCTCCAGCAAATAC
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